Version 1.3.2 of CRAC is released. The main changes are the following ones:

  • Bug corrections affecting very large files in GkArrays (thanks a lot to Caroline Menguy for her help): processing very large files could take too many time (or even never finish).
  • A new option --treat-multiple has been added that allows to have information on all the reads in SAM file (by default CRAC doesn't care about reads that seem to appear too many times).
  • Output can be written on STDOUT using -o - and the summary can be written in a specific file using --summary.
  • Option --max-paired-length has been removed since its use is the same as for --max-splice-length. Please use the latter instead.
  • Few minor corrections (thanks to zhouwp for pointing out a problem with old version of grep, with make check).