Version 1.3.2 of CRAC is released. The main changes are the following ones:
- Bug corrections affecting very large files in GkArrays (thanks a lot to Caroline Menguy for her help): processing very large files could take too many time (or even never finish).
- A new option
--treat-multiplehas been added that allows to have information on all the reads in SAM file (by default CRAC doesn't care about reads that seem to appear too many times).
- Output can be written on STDOUT using
-o -and the summary can be written in a specific file using
--max-paired-lengthhas been removed since its use is the same as for
--max-splice-length. Please use the latter instead.
- Few minor corrections (thanks to zhouwp for pointing out a problem
with old version of