Version 1.3.2 of CRAC is released. The main changes are the following ones:
- Bug corrections affecting very large files in GkArrays (thanks a lot to Caroline Menguy for her help): processing very large files could take too many time (or even never finish).
- A new option
--treat-multiple
has been added that allows to have information on all the reads in SAM file (by default CRAC doesn't care about reads that seem to appear too many times). - Output can be written on STDOUT using
-o -
and the summary can be written in a specific file using--summary
. - Option
--max-paired-length
has been removed since its use is the same as for--max-splice-length
. Please use the latter instead. - Few minor corrections (thanks to zhouwp for pointing out a problem
with old version of
grep
, withmake check
).