Galaxy is « an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses ».
Marine Rohmer worked during her Master's on creating a Galaxy wrapper for CRAC. You can download it here. You may have to modify it to adapt it to your needs.
CRAC is now released under version 1.2.2. It integrates several improvements:
Correction of several bugs:
Add several improvements:
This changes were made by Jérôme Audoux, Nicolas Philippe and Mikaël Salson (in alphabetical order).
CRAC is now released under version 1.2.1. It integrates several improvements:
Thanks to Jérôme Audoux for several improvements as well as Nicolas Philippe and Mikaël Salson.
The article is now published in Genome Biology online. The final PDF version is not avaliable yet.
The publication on CRAC has been accepted for publication in Genome Biology.
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New releases and related tools will be announced through the CRAC mailing list.
Check out the CracTools : Integrated pipelines for RNA-Seq analysis using CRAC additional fields, annotation and much more.
A galaxy wrapper for CRAC is available and can be downloaded here.
Any question regarding the software? Send an email to firstname.lastname@example.org.
A question, a comment, a remark on the algorithm or the article, send an email to email@example.com
Nicolas Philippe, Mikaël Salson, Thérèse Commes and Eric Rivals.CRAC: an integrated approach to the analysis of RNA-seq reads doi:10.1186/gb-2013-14-3-r30